Report for Sequence Feature Glyma12g04880
Feature Type: gene_model
Chromosome: Gm12
Start: 3233268
stop: 3236391
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g04880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49320 AT
Annotation by Michelle Graham. TAIR10: unknown seed protein like 1 | chr1:18246441-18247817 FORWARD LENGTH=280
SoyBase E_val: 2.00E-51 ISS
GO:0048316 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed development
SoyBase N/A ISS
GO:0000326 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03181 PFAM
BURP domain
JGI ISS
UniRef100_G7J6I5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BURP domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J6I5_MEDTR
SoyBase E_val: 8.00E-121 ISS
UniRef100_I1LQ51 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LQ51_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g04880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma12g04880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g044600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g04880
Coding sequences of Glyma12g04880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g04880.1 sequence type=CDS gene model=Glyma12g04880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCCTACTCTTGCCCTTCAGTTTCTTTCTCTTTTCCTTTTGTTCATTATGAATGGCTATGTCATTGGAGCTAGAGATATGAAGGTAGAACTGCGAGATCAGAAGCAAGTGGAATGGTACAAAGCCACATCAGTGTCCAATGACGAGTCTAATGGCAAAGGGTACATAACCACTTCAGAATCCGCTGAACCTAATTACATAGCTTCATATACTGCTGCTAAACACAACCAAAACCATGAAAAACTCCATCAACCTTACATAGCTGGGTACACAAGTGATGCTGCCAACAAAGCCAATCAATACATAGCAGGGTATAGGACCAAAACTCATGATTCCAATACACCTTACATAGCTGGGTACACAACAACCAGTGCTTCCCACAAAGCCAATCAACCTAATTACCTTGCAGGGTATAGGACCAAAACCGATGATTCCAATACACCCTACATAGCTGGGTATACAACAACTAATGCCCATGTGGCAAATAATCAACCTAATTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTACATTGCAGGGTATAGGACTAGAACCACCCATGATCCTAATGCACCTTACATAGCTGGGTACACAACAACTAGTGCCAAGAAAGCTCCAAAAGGGTCATCTCATGATGATACCACTGGACCTTACATAACCCAATATGGTGGACCCGGTCCCAAAAATGACCCAAAAGAATCTTCCAACTTGGACCATACAGAGGCTTTCAAGACAGGATTTTTCGCCTTGGATGATCTATATGTTGGGAATGTGATGACCCTCCAATTTCCAATTCAAGATGTTTCTCAATTCTTACCAAGAAAAGAGGCTGAGTCCATTCCTTTCTCAATCTCACAACTCCCCAGTGTTCTTCAACTCTTCTCAATCTCTGAAGATTCTCCTGAGGCCAATGCCATGAGAGACACACTTGAACAATGTGAAGCAGAACCCATCACAGGGGAGACCAAGATTTGTGCCACCTCTTTAGAGTCCATGCTTGAATTCATTGGCACAATCATTGGTTCAGAGACCAAGCATAATATTCTCACAACCACACTTCCCACAGCCTCAGGTGTCCCTCTACAAAAGTTCACCATTTTGGAAGTGTCTGAAGATATCAACGCTGCTAAATGGGTAGCTTGTCATCCCCTACCATATCCCTATGCCATTTACTATTGCCACTTCATAGCAACAGGGAGCAAGGTGTTCAAGGTCTCACTAGGTAGCGAGAATGGAGATGACAAAATTGAAGCTCTTGGCATTTGCCATTTGGACACATCTGATTGGAGCCCAAATCATATTATATTTAGGCAGCTTGGAATCAAGCCTGGGAAGGATGCAGTGTGCCACTTCTTCCCTATAAAACATCTTATGTGGGTTCCCAAGCCTTTACAAGCCACCATGTGA
Predicted protein sequences of Glyma12g04880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g04880.1 sequence type=predicted peptide gene model=Glyma12g04880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPTLALQFLSLFLLFIMNGYVIGARDMKVELRDQKQVEWYKATSVSNDESNGKGYITTSESAEPNYIASYTAAKHNQNHEKLHQPYIAGYTSDAANKANQYIAGYRTKTHDSNTPYIAGYTTTSASHKANQPNYLAGYRTKTDDSNTPYIAGYTTTNAHVANNQPNYIAGYRTSTTQESNTPSYIAGYRTSTTQESNTPSYIAGYRTSTTQESNTPYIAGYRTSTTQESNTPYIAGYRTSTTQESNTPYIAGYRTRTTHDPNAPYIAGYTTTSAKKAPKGSSHDDTTGPYITQYGGPGPKNDPKESSNLDHTEAFKTGFFALDDLYVGNVMTLQFPIQDVSQFLPRKEAESIPFSISQLPSVLQLFSISEDSPEANAMRDTLEQCEAEPITGETKICATSLESMLEFIGTIIGSETKHNILTTTLPTASGVPLQKFTILEVSEDINAAKWVACHPLPYPYAIYYCHFIATGSKVFKVSLGSENGDDKIEALGICHLDTSDWSPNHIIFRQLGIKPGKDAVCHFFPIKHLMWVPKPLQATM*